High-throughput sequencing Chromosome Conformation Capture (Hi-C) allows the study of chromatin interactions and 3D chromosome folding on a larger scale. A graph-based multi-level representation of Hi-C data is essential for proper visualisation of the spatial pattern they represent, in particular for comparing different experiments or for re-mapping omics-data in a space-aware context. This project aims at developing NeoHiC, a user-friendly web application for the progressive graph visualisation of Hi-C data based on the use of the Neo4j graph database.
Contacts:
Daniele D’Agostino – dagostino@ieiit.cnr.it
Source code:
https://github.com/dddagostino/neohic